MRID Logodd
Julia Kaye
Thomas Reuben
Stephanie Lam
2025-07-16
Last code update: Feb 8, 202s4
User Inputs
source directory: /Users/nalbistami/Gladstone Dropbox/Noura Al
Bistami/AALS Shared DropBox/GEDI Analysis/Combined
Experiments/CombinedC9orf72/Class compare
output directory: /Users/nalbistami/Gladstone Dropbox/Noura Al
Bistami/AALS Shared DropBox/GEDI Analysis/Combined
Experiments/CombinedC9orf72/Class compare
drug: FALSE
drug kept: None
line kept: 0YX7iCTR, 6ZLDiALS, BUUiALS, 2AE8iCTR
multiple_experiments: TRUE
multiple_plates <- FALSE
compare_cellline <- FALSE
compare_class <- TRUE
compare_drug <-FALSE
reference conditions:
##
##
## |Experiment |Plate |CellLine | sum_live| sum_dead|
## |:----------|:-----|:--------|--------:|--------:|
## |Set26 |NA |0YX7iCTR | 22460| 665|
## |Set26 |NA |2AE8iCTR | 14628| 756|
## |Set26 |NA |BUUiALS | 12712| 775|
## |Set29 |NA |2AE8iCTR | 5463| 350|
## |Set29 |NA |6ZLDiALS | 7229| 351|
## |Set29 |NA |BUUiALS | 9774| 276|
## |Set30 |NA |0YX7iCTR | 1409| 144|
## |Set30 |NA |2AE8iCTR | 1670| 148|
## |Set30 |NA |6ZLDiALS | 695| 97|
## |Set30 |NA |BUUiALS | 1813| 119|
## |Set32 |NA |2AE8iCTR | 1927| 118|
## |Set32 |NA |6ZLDiALS | 588| 269|
## |Set32 |NA |BUUiALS | 987| 174|
## |Set33 |NA |0YX7iCTR | 986| 24|
## |Set33 |NA |BUUiALS | 8449| 339|
## |Set34 |NA |0YX7iCTR | 1784| 112|
## |Set34 |NA |BUUiALS | 2177| 75|
## |Set35 |NA |0YX7iCTR | 2274| 69|
## |Set35 |NA |BUUiALS | 9077| 348|
## |Set36 |NA |2AE8iCTR | 30438| 412|
## |Set36 |NA |6ZLDiALS | 3897| 497|
## |Set40 |NA |0YX7iCTR | 52680| 4734|
## |Set40 |NA |6ZLDiALS | 2945| 2454|
## |Set40 |NA |BUUiALS | 15073| 3233|
## |Set44 |NA |0YX7iCTR | 7678| 957|
## |Set44 |NA |6ZLDiALS | 869| 770|
## |Set44 |NA |BUUiALS | 942| 462|
## |Set45 |NA |0YX7iCTR | 26083| 1432|
## |Set45 |NA |6ZLDiALS | 27504| 1178|
## |Set51 |NA |0YX7iCTR | 8098| 831|
## |Set51 |NA |6ZLDiALS | 7716| 1271|
## |Set52 |NA |0YX7iCTR | 2393| 1241|
## |Set52 |NA |6ZLDiALS | 855| 2003|
## |set57 |NA |0YX7iCTR | 9115| 1044|
## |set57 |NA |6ZLDiALS | 4576| 2345|
## |set58 |NA |0YX7iCTR | 2456| 84|
## |set58 |NA |6ZLDiALS | 5988| 255|
## |set59 |NA |0YX7iCTR | 3144| 529|
## |set59 |NA |6ZLDiALS | 1653| 411|##
##
## |Experiment |Plate |CellLine |Timepoint |Hour | sum_live| sum_dead|
## |:----------|:-----|:--------|:---------|:----|--------:|--------:|
## |Set26 |NA |0YX7iCTR |1 |0 | 2991| 57|
## |Set26 |NA |0YX7iCTR |2 |24 | 3209| 49|
## |Set26 |NA |0YX7iCTR |3 |48 | 3186| 45|
## |Set26 |NA |0YX7iCTR |4 |72 | 3081| 60|
## |Set26 |NA |0YX7iCTR |5 |96 | 3063| 67|
## |Set26 |NA |0YX7iCTR |6 |120 | 2439| 119|
## |Set26 |NA |0YX7iCTR |7 |144 | 2180| 156|
## |Set26 |NA |0YX7iCTR |8 |168 | 2311| 112|
## |Set26 |NA |2AE8iCTR |1 |0 | 2018| 69|
## |Set26 |NA |2AE8iCTR |2 |24 | 2366| 53|
## |Set26 |NA |2AE8iCTR |3 |48 | 2260| 55|
## |Set26 |NA |2AE8iCTR |4 |72 | 2040| 62|
## |Set26 |NA |2AE8iCTR |5 |96 | 1995| 80|
## |Set26 |NA |2AE8iCTR |6 |120 | 1405| 121|
## |Set26 |NA |2AE8iCTR |7 |144 | 1184| 157|
## |Set26 |NA |2AE8iCTR |8 |168 | 1360| 159|
## |Set26 |NA |BUUiALS |1 |0 | 1874| 121|
## |Set26 |NA |BUUiALS |2 |24 | 1946| 64|
## |Set26 |NA |BUUiALS |3 |48 | 1900| 61|
## |Set26 |NA |BUUiALS |4 |72 | 1738| 60|
## |Set26 |NA |BUUiALS |5 |96 | 1736| 55|
## |Set26 |NA |BUUiALS |6 |120 | 1242| 129|
## |Set26 |NA |BUUiALS |7 |144 | 1092| 167|
## |Set26 |NA |BUUiALS |8 |168 | 1184| 118|
## |Set29 |NA |2AE8iCTR |1 |0 | 1201| 47|
## |Set29 |NA |2AE8iCTR |2 |24 | 931| 37|
## |Set29 |NA |2AE8iCTR |3 |48 | 1091| 35|
## |Set29 |NA |2AE8iCTR |6 |120 | 678| 68|
## |Set29 |NA |2AE8iCTR |7 |144 | 780| 86|
## |Set29 |NA |2AE8iCTR |8 |168 | 782| 77|
## |Set29 |NA |6ZLDiALS |1 |0 | 1351| 41|
## |Set29 |NA |6ZLDiALS |2 |24 | 1256| 41|
## |Set29 |NA |6ZLDiALS |3 |48 | 1358| 47|
## |Set29 |NA |6ZLDiALS |6 |120 | 941| 84|
## |Set29 |NA |6ZLDiALS |7 |144 | 1143| 66|
## |Set29 |NA |6ZLDiALS |8 |168 | 1180| 72|
## |Set29 |NA |BUUiALS |1 |0 | 1806| 42|
## |Set29 |NA |BUUiALS |2 |24 | 1540| 35|
## |Set29 |NA |BUUiALS |3 |48 | 1696| 37|
## |Set29 |NA |BUUiALS |6 |120 | 1498| 52|
## |Set29 |NA |BUUiALS |7 |144 | 1595| 46|
## |Set29 |NA |BUUiALS |8 |168 | 1639| 64|
## |Set30 |NA |0YX7iCTR |1 |0 | 111| 18|
## |Set30 |NA |0YX7iCTR |2 |24 | 122| 17|
## |Set30 |NA |0YX7iCTR |3 |48 | 139| 15|
## |Set30 |NA |0YX7iCTR |4 |72 | 151| 15|
## |Set30 |NA |0YX7iCTR |5 |96 | 149| 14|
## |Set30 |NA |0YX7iCTR |6 |120 | 188| 17|
## |Set30 |NA |0YX7iCTR |7 |144 | 188| 11|
## |Set30 |NA |0YX7iCTR |8 |168 | 185| 21|
## |Set30 |NA |0YX7iCTR |9 |192 | 176| 16|
## |Set30 |NA |2AE8iCTR |1 |0 | 62| 20|
## |Set30 |NA |2AE8iCTR |2 |24 | 106| 32|
## |Set30 |NA |2AE8iCTR |3 |48 | 109| 24|
## |Set30 |NA |2AE8iCTR |4 |72 | 181| 21|
## |Set30 |NA |2AE8iCTR |5 |96 | 215| 15|
## |Set30 |NA |2AE8iCTR |6 |120 | 288| 14|
## |Set30 |NA |2AE8iCTR |7 |144 | 236| 4|
## |Set30 |NA |2AE8iCTR |8 |168 | 252| 5|
## |Set30 |NA |2AE8iCTR |9 |192 | 221| 13|
## |Set30 |NA |6ZLDiALS |1 |0 | 32| 9|
## |Set30 |NA |6ZLDiALS |2 |24 | 48| 13|
## |Set30 |NA |6ZLDiALS |3 |48 | 63| 16|
## |Set30 |NA |6ZLDiALS |4 |72 | 87| 8|
## |Set30 |NA |6ZLDiALS |5 |96 | 83| 5|
## |Set30 |NA |6ZLDiALS |6 |120 | 89| 9|
## |Set30 |NA |6ZLDiALS |7 |144 | 91| 12|
## |Set30 |NA |6ZLDiALS |8 |168 | 105| 8|
## |Set30 |NA |6ZLDiALS |9 |192 | 97| 17|
## |Set30 |NA |BUUiALS |1 |0 | 120| 7|
## |Set30 |NA |BUUiALS |2 |24 | 124| 14|
## |Set30 |NA |BUUiALS |3 |48 | 159| 15|
## |Set30 |NA |BUUiALS |4 |72 | 188| 10|
## |Set30 |NA |BUUiALS |5 |96 | 203| 14|
## |Set30 |NA |BUUiALS |6 |120 | 238| 12|
## |Set30 |NA |BUUiALS |7 |144 | 258| 21|
## |Set30 |NA |BUUiALS |8 |168 | 269| 14|
## |Set30 |NA |BUUiALS |9 |192 | 254| 12|
## |Set32 |NA |2AE8iCTR |1 |0 | 157| 10|
## |Set32 |NA |2AE8iCTR |2 |24 | 187| 13|
## |Set32 |NA |2AE8iCTR |3 |48 | 238| 16|
## |Set32 |NA |2AE8iCTR |4 |72 | 249| 7|
## |Set32 |NA |2AE8iCTR |5 |96 | 287| 15|
## |Set32 |NA |2AE8iCTR |6 |120 | 269| 17|
## |Set32 |NA |2AE8iCTR |7 |144 | 243| 23|
## |Set32 |NA |2AE8iCTR |8 |168 | 297| 17|
## |Set32 |NA |6ZLDiALS |1 |0 | 58| 26|
## |Set32 |NA |6ZLDiALS |2 |24 | 47| 33|
## |Set32 |NA |6ZLDiALS |3 |48 | 75| 30|
## |Set32 |NA |6ZLDiALS |4 |72 | 80| 35|
## |Set32 |NA |6ZLDiALS |5 |96 | 81| 43|
## |Set32 |NA |6ZLDiALS |6 |120 | 78| 34|
## |Set32 |NA |6ZLDiALS |7 |144 | 82| 34|
## |Set32 |NA |6ZLDiALS |8 |168 | 87| 34|
## |Set32 |NA |BUUiALS |1 |0 | 91| 13|
## |Set32 |NA |BUUiALS |2 |24 | 122| 16|
## |Set32 |NA |BUUiALS |3 |48 | 142| 17|
## |Set32 |NA |BUUiALS |4 |72 | 154| 17|
## |Set32 |NA |BUUiALS |5 |96 | 137| 33|
## |Set32 |NA |BUUiALS |6 |120 | 74| 13|
## |Set32 |NA |BUUiALS |7 |144 | 125| 30|
## |Set32 |NA |BUUiALS |8 |168 | 142| 35|
## |Set33 |NA |0YX7iCTR |1 |0 | 185| 3|
## |Set33 |NA |0YX7iCTR |2 |24 | 203| 4|
## |Set33 |NA |0YX7iCTR |5 |96 | 204| 5|
## |Set33 |NA |0YX7iCTR |6 |120 | 194| 7|
## |Set33 |NA |0YX7iCTR |8 |168 | 200| 5|
## |Set33 |NA |BUUiALS |1 |0 | 1934| 94|
## |Set33 |NA |BUUiALS |2 |24 | 1918| 76|
## |Set33 |NA |BUUiALS |5 |96 | 1999| 65|
## |Set33 |NA |BUUiALS |6 |120 | 1766| 55|
## |Set33 |NA |BUUiALS |8 |168 | 832| 49|
## |Set34 |NA |0YX7iCTR |1 |0 | 415| 23|
## |Set34 |NA |0YX7iCTR |6 |120 | 453| 22|
## |Set34 |NA |0YX7iCTR |7 |144 | 460| 33|
## |Set34 |NA |0YX7iCTR |8 |168 | 456| 34|
## |Set34 |NA |BUUiALS |1 |0 | 497| 26|
## |Set34 |NA |BUUiALS |6 |120 | 563| 15|
## |Set34 |NA |BUUiALS |7 |144 | 562| 13|
## |Set34 |NA |BUUiALS |8 |168 | 555| 21|
## |Set35 |NA |0YX7iCTR |1 |0 | 446| 7|
## |Set35 |NA |0YX7iCTR |2 |24 | 485| 7|
## |Set35 |NA |0YX7iCTR |3 |48 | 437| 10|
## |Set35 |NA |0YX7iCTR |4 |72 | 357| 11|
## |Set35 |NA |0YX7iCTR |5 |96 | 296| 13|
## |Set35 |NA |0YX7iCTR |6 |120 | 253| 21|
## |Set35 |NA |BUUiALS |1 |0 | 1283| 23|
## |Set35 |NA |BUUiALS |2 |24 | 1421| 33|
## |Set35 |NA |BUUiALS |3 |48 | 1683| 62|
## |Set35 |NA |BUUiALS |4 |72 | 1619| 70|
## |Set35 |NA |BUUiALS |5 |96 | 1565| 82|
## |Set35 |NA |BUUiALS |6 |120 | 1506| 78|
## |Set36 |NA |2AE8iCTR |1 |0 | 3746| 29|
## |Set36 |NA |2AE8iCTR |2 |24 | 4034| 29|
## |Set36 |NA |2AE8iCTR |3 |48 | 3723| 37|
## |Set36 |NA |2AE8iCTR |4 |72 | 3863| 59|
## |Set36 |NA |2AE8iCTR |5 |96 | 4025| 74|
## |Set36 |NA |2AE8iCTR |6 |120 | 3961| 77|
## |Set36 |NA |2AE8iCTR |7 |144 | 3573| 52|
## |Set36 |NA |2AE8iCTR |8 |168 | 3513| 55|
## |Set36 |NA |6ZLDiALS |1 |0 | 367| 21|
## |Set36 |NA |6ZLDiALS |2 |24 | 470| 51|
## |Set36 |NA |6ZLDiALS |3 |48 | 516| 35|
## |Set36 |NA |6ZLDiALS |4 |72 | 557| 57|
## |Set36 |NA |6ZLDiALS |5 |96 | 554| 87|
## |Set36 |NA |6ZLDiALS |6 |120 | 527| 88|
## |Set36 |NA |6ZLDiALS |7 |144 | 506| 78|
## |Set36 |NA |6ZLDiALS |8 |168 | 400| 80|
## |Set40 |NA |0YX7iCTR |1 |0 | 4891| 235|
## |Set40 |NA |0YX7iCTR |2 |24 | 5540| 413|
## |Set40 |NA |0YX7iCTR |3 |48 | 5770| 441|
## |Set40 |NA |0YX7iCTR |4 |72 | 6004| 474|
## |Set40 |NA |0YX7iCTR |5 |96 | 5927| 493|
## |Set40 |NA |0YX7iCTR |6 |120 | 5993| 594|
## |Set40 |NA |0YX7iCTR |7 |144 | 6053| 600|
## |Set40 |NA |0YX7iCTR |8 |168 | 6200| 699|
## |Set40 |NA |0YX7iCTR |9 |192 | 6302| 785|
## |Set40 |NA |6ZLDiALS |1 |0 | 420| 330|
## |Set40 |NA |6ZLDiALS |2 |24 | 323| 349|
## |Set40 |NA |6ZLDiALS |3 |48 | 299| 332|
## |Set40 |NA |6ZLDiALS |4 |72 | 321| 242|
## |Set40 |NA |6ZLDiALS |5 |96 | 290| 253|
## |Set40 |NA |6ZLDiALS |6 |120 | 294| 206|
## |Set40 |NA |6ZLDiALS |7 |144 | 335| 235|
## |Set40 |NA |6ZLDiALS |8 |168 | 335| 250|
## |Set40 |NA |6ZLDiALS |9 |192 | 328| 257|
## |Set40 |NA |BUUiALS |1 |0 | 2596| 485|
## |Set40 |NA |BUUiALS |2 |24 | 2133| 491|
## |Set40 |NA |BUUiALS |3 |48 | 1892| 377|
## |Set40 |NA |BUUiALS |4 |72 | 1777| 324|
## |Set40 |NA |BUUiALS |5 |96 | 1492| 305|
## |Set40 |NA |BUUiALS |6 |120 | 1394| 328|
## |Set40 |NA |BUUiALS |7 |144 | 1256| 314|
## |Set40 |NA |BUUiALS |8 |168 | 1286| 311|
## |Set40 |NA |BUUiALS |9 |192 | 1247| 298|
## |Set44 |NA |0YX7iCTR |1 |0 | 800| 291|
## |Set44 |NA |0YX7iCTR |2 |24 | 1836| 117|
## |Set44 |NA |0YX7iCTR |3 |48 | 1785| 88|
## |Set44 |NA |0YX7iCTR |4 |72 | 1721| 116|
## |Set44 |NA |0YX7iCTR |5 |96 | 803| 192|
## |Set44 |NA |0YX7iCTR |8 |168 | 733| 153|
## |Set44 |NA |6ZLDiALS |1 |0 | 125| 272|
## |Set44 |NA |6ZLDiALS |2 |24 | 239| 142|
## |Set44 |NA |6ZLDiALS |3 |48 | 221| 76|
## |Set44 |NA |6ZLDiALS |4 |72 | 151| 84|
## |Set44 |NA |6ZLDiALS |5 |96 | 82| 102|
## |Set44 |NA |6ZLDiALS |8 |168 | 51| 94|
## |Set44 |NA |BUUiALS |1 |0 | 123| 173|
## |Set44 |NA |BUUiALS |2 |24 | 272| 79|
## |Set44 |NA |BUUiALS |3 |48 | 260| 73|
## |Set44 |NA |BUUiALS |4 |72 | 182| 44|
## |Set44 |NA |BUUiALS |5 |96 | 76| 45|
## |Set44 |NA |BUUiALS |8 |168 | 29| 48|
## |Set45 |NA |0YX7iCTR |1 |0 | 4183| 173|
## |Set45 |NA |0YX7iCTR |2 |24 | 3602| 87|
## |Set45 |NA |0YX7iCTR |3 |48 | 3324| 216|
## |Set45 |NA |0YX7iCTR |4 |72 | 2512| 219|
## |Set45 |NA |0YX7iCTR |5 |96 | 2619| 118|
## |Set45 |NA |0YX7iCTR |6 |120 | 2444| 107|
## |Set45 |NA |0YX7iCTR |7 |144 | 1878| 166|
## |Set45 |NA |0YX7iCTR |8 |168 | 1588| 102|
## |Set45 |NA |0YX7iCTR |9 |192 | 2050| 89|
## |Set45 |NA |0YX7iCTR |10 |216 | 1883| 155|
## |Set45 |NA |6ZLDiALS |1 |0 | 3588| 69|
## |Set45 |NA |6ZLDiALS |2 |24 | 3383| 91|
## |Set45 |NA |6ZLDiALS |3 |48 | 3301| 140|
## |Set45 |NA |6ZLDiALS |4 |72 | 2818| 95|
## |Set45 |NA |6ZLDiALS |5 |96 | 3223| 152|
## |Set45 |NA |6ZLDiALS |6 |120 | 3037| 112|
## |Set45 |NA |6ZLDiALS |7 |144 | 2034| 175|
## |Set45 |NA |6ZLDiALS |8 |168 | 1773| 75|
## |Set45 |NA |6ZLDiALS |9 |192 | 2256| 137|
## |Set45 |NA |6ZLDiALS |10 |216 | 2091| 132|
## |Set51 |NA |0YX7iCTR |1 |0 | 880| 45|
## |Set51 |NA |0YX7iCTR |2 |24 | 976| 46|
## |Set51 |NA |0YX7iCTR |3 |48 | 746| 43|
## |Set51 |NA |0YX7iCTR |4 |72 | 1058| 63|
## |Set51 |NA |0YX7iCTR |5 |96 | 1080| 70|
## |Set51 |NA |0YX7iCTR |6 |120 | 744| 105|
## |Set51 |NA |0YX7iCTR |7 |144 | 926| 93|
## |Set51 |NA |0YX7iCTR |8 |168 | 814| 163|
## |Set51 |NA |0YX7iCTR |9 |192 | 874| 203|
## |Set51 |NA |6ZLDiALS |1 |0 | 524| 147|
## |Set51 |NA |6ZLDiALS |2 |24 | 737| 123|
## |Set51 |NA |6ZLDiALS |3 |48 | 776| 122|
## |Set51 |NA |6ZLDiALS |4 |72 | 972| 114|
## |Set51 |NA |6ZLDiALS |5 |96 | 1047| 109|
## |Set51 |NA |6ZLDiALS |6 |120 | 794| 108|
## |Set51 |NA |6ZLDiALS |7 |144 | 1049| 123|
## |Set51 |NA |6ZLDiALS |8 |168 | 833| 178|
## |Set51 |NA |6ZLDiALS |9 |192 | 984| 247|
## |Set52 |NA |0YX7iCTR |1 |0 | 323| 82|
## |Set52 |NA |0YX7iCTR |2 |24 | 490| 191|
## |Set52 |NA |0YX7iCTR |3 |48 | 614| 215|
## |Set52 |NA |0YX7iCTR |4 |72 | 405| 388|
## |Set52 |NA |0YX7iCTR |5 |96 | 561| 365|
## |Set52 |NA |6ZLDiALS |1 |0 | 152| 175|
## |Set52 |NA |6ZLDiALS |2 |24 | 215| 367|
## |Set52 |NA |6ZLDiALS |3 |48 | 257| 496|
## |Set52 |NA |6ZLDiALS |4 |72 | 105| 549|
## |Set52 |NA |6ZLDiALS |5 |96 | 126| 416|
## |set57 |NA |0YX7iCTR |1 |0 | 731| 68|
## |set57 |NA |0YX7iCTR |2 |24 | 990| 55|
## |set57 |NA |0YX7iCTR |3 |48 | 635| 67|
## |set57 |NA |0YX7iCTR |4 |72 | 877| 47|
## |set57 |NA |0YX7iCTR |5 |96 | 929| 49|
## |set57 |NA |0YX7iCTR |6 |120 | 377| 104|
## |set57 |NA |0YX7iCTR |7 |144 | 795| 74|
## |set57 |NA |0YX7iCTR |8 |168 | 571| 106|
## |set57 |NA |0YX7iCTR |9 |192 | 912| 98|
## |set57 |NA |0YX7iCTR |10 |216 | 550| 193|
## |set57 |NA |0YX7iCTR |11 |240 | 892| 85|
## |set57 |NA |0YX7iCTR |12 |264 | 856| 98|
## |set57 |NA |6ZLDiALS |1 |0 | 321| 247|
## |set57 |NA |6ZLDiALS |2 |24 | 490| 199|
## |set57 |NA |6ZLDiALS |3 |48 | 586| 277|
## |set57 |NA |6ZLDiALS |4 |72 | 668| 244|
## |set57 |NA |6ZLDiALS |5 |96 | 790| 229|
## |set57 |NA |6ZLDiALS |6 |120 | 558| 270|
## |set57 |NA |6ZLDiALS |7 |144 | 539| 246|
## |set57 |NA |6ZLDiALS |8 |168 | 229| 191|
## |set57 |NA |6ZLDiALS |9 |192 | 241| 161|
## |set57 |NA |6ZLDiALS |10 |216 | 82| 119|
## |set57 |NA |6ZLDiALS |11 |240 | 62| 94|
## |set57 |NA |6ZLDiALS |12 |264 | 10| 68|
## |set58 |NA |0YX7iCTR |1 |0 | 709| 24|
## |set58 |NA |0YX7iCTR |3 |48 | 340| 4|
## |set58 |NA |0YX7iCTR |4 |72 | 232| 5|
## |set58 |NA |0YX7iCTR |5 |96 | 177| 6|
## |set58 |NA |0YX7iCTR |6 |120 | 140| 4|
## |set58 |NA |0YX7iCTR |8 |168 | 187| 9|
## |set58 |NA |0YX7iCTR |9 |192 | 161| 7|
## |set58 |NA |0YX7iCTR |11 |240 | 274| 12|
## |set58 |NA |0YX7iCTR |12 |264 | 236| 13|
## |set58 |NA |6ZLDiALS |1 |0 | 773| 24|
## |set58 |NA |6ZLDiALS |3 |48 | 726| 39|
## |set58 |NA |6ZLDiALS |4 |72 | 628| 21|
## |set58 |NA |6ZLDiALS |5 |96 | 617| 25|
## |set58 |NA |6ZLDiALS |6 |120 | 573| 23|
## |set58 |NA |6ZLDiALS |8 |168 | 637| 22|
## |set58 |NA |6ZLDiALS |9 |192 | 600| 24|
## |set58 |NA |6ZLDiALS |11 |240 | 742| 41|
## |set58 |NA |6ZLDiALS |12 |264 | 692| 36|
## |set59 |NA |0YX7iCTR |1 |0 | 167| 51|
## |set59 |NA |0YX7iCTR |2 |24 | 223| 57|
## |set59 |NA |0YX7iCTR |3 |48 | 229| 37|
## |set59 |NA |0YX7iCTR |4 |72 | 271| 43|
## |set59 |NA |0YX7iCTR |5 |96 | 264| 47|
## |set59 |NA |0YX7iCTR |6 |120 | 250| 53|
## |set59 |NA |0YX7iCTR |7 |144 | 272| 31|
## |set59 |NA |0YX7iCTR |8 |168 | 280| 42|
## |set59 |NA |0YX7iCTR |9 |192 | 302| 41|
## |set59 |NA |0YX7iCTR |10 |216 | 278| 40|
## |set59 |NA |0YX7iCTR |11 |240 | 324| 47|
## |set59 |NA |0YX7iCTR |12 |264 | 284| 40|
## |set59 |NA |6ZLDiALS |1 |0 | 95| 50|
## |set59 |NA |6ZLDiALS |2 |24 | 78| 63|
## |set59 |NA |6ZLDiALS |3 |48 | 83| 35|
## |set59 |NA |6ZLDiALS |4 |72 | 116| 19|
## |set59 |NA |6ZLDiALS |5 |96 | 122| 24|
## |set59 |NA |6ZLDiALS |6 |120 | 166| 29|
## |set59 |NA |6ZLDiALS |7 |144 | 157| 28|
## |set59 |NA |6ZLDiALS |8 |168 | 175| 44|
## |set59 |NA |6ZLDiALS |9 |192 | 170| 36|
## |set59 |NA |6ZLDiALS |10 |216 | 183| 30|
## |set59 |NA |6ZLDiALS |11 |240 | 182| 30|
## |set59 |NA |6ZLDiALS |12 |264 | 126| 23|##
##
## |Experiment |Plate |Class |Timepoint | sum_live| sum_dead|
## |:----------|:-----|:-----|:---------|--------:|--------:|
## |Set26 |NA |0 |1 | 5009| 126|
## |Set26 |NA |0 |2 | 5575| 102|
## |Set26 |NA |0 |3 | 5446| 100|
## |Set26 |NA |0 |4 | 5121| 122|
## |Set26 |NA |0 |5 | 5058| 147|
## |Set26 |NA |0 |6 | 3844| 240|
## |Set26 |NA |0 |7 | 3364| 313|
## |Set26 |NA |0 |8 | 3671| 271|
## |Set26 |NA |1 |1 | 1874| 121|
## |Set26 |NA |1 |2 | 1946| 64|
## |Set26 |NA |1 |3 | 1900| 61|
## |Set26 |NA |1 |4 | 1738| 60|
## |Set26 |NA |1 |5 | 1736| 55|
## |Set26 |NA |1 |6 | 1242| 129|
## |Set26 |NA |1 |7 | 1092| 167|
## |Set26 |NA |1 |8 | 1184| 118|
## |Set29 |NA |0 |1 | 1201| 47|
## |Set29 |NA |0 |2 | 931| 37|
## |Set29 |NA |0 |3 | 1091| 35|
## |Set29 |NA |0 |6 | 678| 68|
## |Set29 |NA |0 |7 | 780| 86|
## |Set29 |NA |0 |8 | 782| 77|
## |Set29 |NA |1 |1 | 3157| 83|
## |Set29 |NA |1 |2 | 2796| 76|
## |Set29 |NA |1 |3 | 3054| 84|
## |Set29 |NA |1 |6 | 2439| 136|
## |Set29 |NA |1 |7 | 2738| 112|
## |Set29 |NA |1 |8 | 2819| 136|
## |Set30 |NA |0 |1 | 173| 38|
## |Set30 |NA |0 |2 | 228| 49|
## |Set30 |NA |0 |3 | 248| 39|
## |Set30 |NA |0 |4 | 332| 36|
## |Set30 |NA |0 |5 | 364| 29|
## |Set30 |NA |0 |6 | 476| 31|
## |Set30 |NA |0 |7 | 424| 15|
## |Set30 |NA |0 |8 | 437| 26|
## |Set30 |NA |0 |9 | 397| 29|
## |Set30 |NA |1 |1 | 152| 16|
## |Set30 |NA |1 |2 | 172| 27|
## |Set30 |NA |1 |3 | 222| 31|
## |Set30 |NA |1 |4 | 275| 18|
## |Set30 |NA |1 |5 | 286| 19|
## |Set30 |NA |1 |6 | 327| 21|
## |Set30 |NA |1 |7 | 349| 33|
## |Set30 |NA |1 |8 | 374| 22|
## |Set30 |NA |1 |9 | 351| 29|
## |Set32 |NA |0 |1 | 157| 10|
## |Set32 |NA |0 |2 | 187| 13|
## |Set32 |NA |0 |3 | 238| 16|
## |Set32 |NA |0 |4 | 249| 7|
## |Set32 |NA |0 |5 | 287| 15|
## |Set32 |NA |0 |6 | 269| 17|
## |Set32 |NA |0 |7 | 243| 23|
## |Set32 |NA |0 |8 | 297| 17|
## |Set32 |NA |1 |1 | 149| 39|
## |Set32 |NA |1 |2 | 169| 49|
## |Set32 |NA |1 |3 | 217| 47|
## |Set32 |NA |1 |4 | 234| 52|
## |Set32 |NA |1 |5 | 218| 76|
## |Set32 |NA |1 |6 | 152| 47|
## |Set32 |NA |1 |7 | 207| 64|
## |Set32 |NA |1 |8 | 229| 69|
## |Set33 |NA |0 |1 | 185| 3|
## |Set33 |NA |0 |2 | 203| 4|
## |Set33 |NA |0 |5 | 204| 5|
## |Set33 |NA |0 |6 | 194| 7|
## |Set33 |NA |0 |8 | 200| 5|
## |Set33 |NA |1 |1 | 1934| 94|
## |Set33 |NA |1 |2 | 1918| 76|
## |Set33 |NA |1 |5 | 1999| 65|
## |Set33 |NA |1 |6 | 1766| 55|
## |Set33 |NA |1 |8 | 832| 49|
## |Set34 |NA |0 |1 | 415| 23|
## |Set34 |NA |0 |6 | 453| 22|
## |Set34 |NA |0 |7 | 460| 33|
## |Set34 |NA |0 |8 | 456| 34|
## |Set34 |NA |1 |1 | 497| 26|
## |Set34 |NA |1 |6 | 563| 15|
## |Set34 |NA |1 |7 | 562| 13|
## |Set34 |NA |1 |8 | 555| 21|
## |Set35 |NA |0 |1 | 446| 7|
## |Set35 |NA |0 |2 | 485| 7|
## |Set35 |NA |0 |3 | 437| 10|
## |Set35 |NA |0 |4 | 357| 11|
## |Set35 |NA |0 |5 | 296| 13|
## |Set35 |NA |0 |6 | 253| 21|
## |Set35 |NA |1 |1 | 1283| 23|
## |Set35 |NA |1 |2 | 1421| 33|
## |Set35 |NA |1 |3 | 1683| 62|
## |Set35 |NA |1 |4 | 1619| 70|
## |Set35 |NA |1 |5 | 1565| 82|
## |Set35 |NA |1 |6 | 1506| 78|
## |Set36 |NA |0 |1 | 3746| 29|
## |Set36 |NA |0 |2 | 4034| 29|
## |Set36 |NA |0 |3 | 3723| 37|
## |Set36 |NA |0 |4 | 3863| 59|
## |Set36 |NA |0 |5 | 4025| 74|
## |Set36 |NA |0 |6 | 3961| 77|
## |Set36 |NA |0 |7 | 3573| 52|
## |Set36 |NA |0 |8 | 3513| 55|
## |Set36 |NA |1 |1 | 367| 21|
## |Set36 |NA |1 |2 | 470| 51|
## |Set36 |NA |1 |3 | 516| 35|
## |Set36 |NA |1 |4 | 557| 57|
## |Set36 |NA |1 |5 | 554| 87|
## |Set36 |NA |1 |6 | 527| 88|
## |Set36 |NA |1 |7 | 506| 78|
## |Set36 |NA |1 |8 | 400| 80|
## |Set40 |NA |0 |1 | 4891| 235|
## |Set40 |NA |0 |2 | 5540| 413|
## |Set40 |NA |0 |3 | 5770| 441|
## |Set40 |NA |0 |4 | 6004| 474|
## |Set40 |NA |0 |5 | 5927| 493|
## |Set40 |NA |0 |6 | 5993| 594|
## |Set40 |NA |0 |7 | 6053| 600|
## |Set40 |NA |0 |8 | 6200| 699|
## |Set40 |NA |0 |9 | 6302| 785|
## |Set40 |NA |1 |1 | 3016| 815|
## |Set40 |NA |1 |2 | 2456| 840|
## |Set40 |NA |1 |3 | 2191| 709|
## |Set40 |NA |1 |4 | 2098| 566|
## |Set40 |NA |1 |5 | 1782| 558|
## |Set40 |NA |1 |6 | 1688| 534|
## |Set40 |NA |1 |7 | 1591| 549|
## |Set40 |NA |1 |8 | 1621| 561|
## |Set40 |NA |1 |9 | 1575| 555|
## |Set44 |NA |0 |1 | 800| 291|
## |Set44 |NA |0 |2 | 1836| 117|
## |Set44 |NA |0 |3 | 1785| 88|
## |Set44 |NA |0 |4 | 1721| 116|
## |Set44 |NA |0 |5 | 803| 192|
## |Set44 |NA |0 |8 | 733| 153|
## |Set44 |NA |1 |1 | 248| 445|
## |Set44 |NA |1 |2 | 511| 221|
## |Set44 |NA |1 |3 | 481| 149|
## |Set44 |NA |1 |4 | 333| 128|
## |Set44 |NA |1 |5 | 158| 147|
## |Set44 |NA |1 |8 | 80| 142|
## |Set45 |NA |0 |1 | 4183| 173|
## |Set45 |NA |0 |2 | 3602| 87|
## |Set45 |NA |0 |3 | 3324| 216|
## |Set45 |NA |0 |4 | 2512| 219|
## |Set45 |NA |0 |5 | 2619| 118|
## |Set45 |NA |0 |6 | 2444| 107|
## |Set45 |NA |0 |7 | 1878| 166|
## |Set45 |NA |0 |8 | 1588| 102|
## |Set45 |NA |0 |9 | 2050| 89|
## |Set45 |NA |0 |10 | 1883| 155|
## |Set45 |NA |1 |1 | 3588| 69|
## |Set45 |NA |1 |2 | 3383| 91|
## |Set45 |NA |1 |3 | 3301| 140|
## |Set45 |NA |1 |4 | 2818| 95|
## |Set45 |NA |1 |5 | 3223| 152|
## |Set45 |NA |1 |6 | 3037| 112|
## |Set45 |NA |1 |7 | 2034| 175|
## |Set45 |NA |1 |8 | 1773| 75|
## |Set45 |NA |1 |9 | 2256| 137|
## |Set45 |NA |1 |10 | 2091| 132|
## |Set51 |NA |0 |1 | 880| 45|
## |Set51 |NA |0 |2 | 976| 46|
## |Set51 |NA |0 |3 | 746| 43|
## |Set51 |NA |0 |4 | 1058| 63|
## |Set51 |NA |0 |5 | 1080| 70|
## |Set51 |NA |0 |6 | 744| 105|
## |Set51 |NA |0 |7 | 926| 93|
## |Set51 |NA |0 |8 | 814| 163|
## |Set51 |NA |0 |9 | 874| 203|
## |Set51 |NA |1 |1 | 524| 147|
## |Set51 |NA |1 |2 | 737| 123|
## |Set51 |NA |1 |3 | 776| 122|
## |Set51 |NA |1 |4 | 972| 114|
## |Set51 |NA |1 |5 | 1047| 109|
## |Set51 |NA |1 |6 | 794| 108|
## |Set51 |NA |1 |7 | 1049| 123|
## |Set51 |NA |1 |8 | 833| 178|
## |Set51 |NA |1 |9 | 984| 247|
## |Set52 |NA |0 |1 | 323| 82|
## |Set52 |NA |0 |2 | 490| 191|
## |Set52 |NA |0 |3 | 614| 215|
## |Set52 |NA |0 |4 | 405| 388|
## |Set52 |NA |0 |5 | 561| 365|
## |Set52 |NA |1 |1 | 152| 175|
## |Set52 |NA |1 |2 | 215| 367|
## |Set52 |NA |1 |3 | 257| 496|
## |Set52 |NA |1 |4 | 105| 549|
## |Set52 |NA |1 |5 | 126| 416|
## |set57 |NA |0 |1 | 731| 68|
## |set57 |NA |0 |2 | 990| 55|
## |set57 |NA |0 |3 | 635| 67|
## |set57 |NA |0 |4 | 877| 47|
## |set57 |NA |0 |5 | 929| 49|
## |set57 |NA |0 |6 | 377| 104|
## |set57 |NA |0 |7 | 795| 74|
## |set57 |NA |0 |8 | 571| 106|
## |set57 |NA |0 |9 | 912| 98|
## |set57 |NA |0 |10 | 550| 193|
## |set57 |NA |0 |11 | 892| 85|
## |set57 |NA |0 |12 | 856| 98|
## |set57 |NA |1 |1 | 321| 247|
## |set57 |NA |1 |2 | 490| 199|
## |set57 |NA |1 |3 | 586| 277|
## |set57 |NA |1 |4 | 668| 244|
## |set57 |NA |1 |5 | 790| 229|
## |set57 |NA |1 |6 | 558| 270|
## |set57 |NA |1 |7 | 539| 246|
## |set57 |NA |1 |8 | 229| 191|
## |set57 |NA |1 |9 | 241| 161|
## |set57 |NA |1 |10 | 82| 119|
## |set57 |NA |1 |11 | 62| 94|
## |set57 |NA |1 |12 | 10| 68|
## |set58 |NA |0 |1 | 709| 24|
## |set58 |NA |0 |3 | 340| 4|
## |set58 |NA |0 |4 | 232| 5|
## |set58 |NA |0 |5 | 177| 6|
## |set58 |NA |0 |6 | 140| 4|
## |set58 |NA |0 |8 | 187| 9|
## |set58 |NA |0 |9 | 161| 7|
## |set58 |NA |0 |11 | 274| 12|
## |set58 |NA |0 |12 | 236| 13|
## |set58 |NA |1 |1 | 773| 24|
## |set58 |NA |1 |3 | 726| 39|
## |set58 |NA |1 |4 | 628| 21|
## |set58 |NA |1 |5 | 617| 25|
## |set58 |NA |1 |6 | 573| 23|
## |set58 |NA |1 |8 | 637| 22|
## |set58 |NA |1 |9 | 600| 24|
## |set58 |NA |1 |11 | 742| 41|
## |set58 |NA |1 |12 | 692| 36|
## |set59 |NA |0 |1 | 167| 51|
## |set59 |NA |0 |2 | 223| 57|
## |set59 |NA |0 |3 | 229| 37|
## |set59 |NA |0 |4 | 271| 43|
## |set59 |NA |0 |5 | 264| 47|
## |set59 |NA |0 |6 | 250| 53|
## |set59 |NA |0 |7 | 272| 31|
## |set59 |NA |0 |8 | 280| 42|
## |set59 |NA |0 |9 | 302| 41|
## |set59 |NA |0 |10 | 278| 40|
## |set59 |NA |0 |11 | 324| 47|
## |set59 |NA |0 |12 | 284| 40|
## |set59 |NA |1 |1 | 95| 50|
## |set59 |NA |1 |2 | 78| 63|
## |set59 |NA |1 |3 | 83| 35|
## |set59 |NA |1 |4 | 116| 19|
## |set59 |NA |1 |5 | 122| 24|
## |set59 |NA |1 |6 | 166| 29|
## |set59 |NA |1 |7 | 157| 28|
## |set59 |NA |1 |8 | 175| 44|
## |set59 |NA |1 |9 | 170| 36|
## |set59 |NA |1 |10 | 183| 30|
## |set59 |NA |1 |11 | 182| 30|
## |set59 |NA |1 |12 | 126| 23|
##
##
## |Experiment | sum_live| sum_dead|
## |:----------|--------:|--------:|
## |Set26 | 49800| 2196|
## |Set29 | 22466| 977|
## |Set30 | 5587| 508|
## |Set32 | 3502| 561|
## |Set33 | 9435| 363|
## |Set34 | 3961| 187|
## |Set35 | 11351| 417|
## |Set36 | 34335| 909|
## |Set40 | 70698| 10421|
## |Set44 | 9489| 2189|
## |Set45 | 53587| 2610|
## |Set51 | 15814| 2102|
## |Set52 | 3248| 3244|
## |set57 | 13691| 3389|
## |set58 | 8444| 339|
## |set59 | 4797| 940|
————————————————————————
Odds Ratio Comparing Class:
Odds Ratio Comparing: 0 vs 1 with no drug
[1] “Overall significance (p-value) of association across all time-points = 5.62717640786736e-19”
[1] “Akaike Information Criterion (AIC) = 19105.1964597778”
| Estimate | Std. Error | z value | Pr(>|z|) | |
|---|---|---|---|---|
| (Intercept) | -3.1872307 | 0.3178228 | -10.028326 | 0.0000000 |
| Class1 | 0.7465097 | 0.2727943 | 2.736530 | 0.0062091 |
| Timepoint | 0.0945551 | 0.0035590 | 26.568141 | 0.0000000 |
| Class1:Timepoint | -0.0455014 | 0.0050324 | -9.041757 | 0.0000000 |
| OR | Time | lower | upper | lower99 | upper99 | pvalue | Reference | Compare |
|---|---|---|---|---|---|---|---|---|
| 2.109624 | 0 | 1.2359414 | 3.600910 | 1.0450497 | 4.258662 | 0.0062091 | 0 | 1 |
| 2.015784 | 1 | 1.1819349 | 3.437910 | 0.9996421 | 4.064841 | 0.0100622 | 0 | 1 |
| 1.926119 | 2 | 1.1300835 | 3.282884 | 0.9559799 | 3.880765 | 0.0159735 | 0 | 1 |
| 1.840442 | 3 | 1.0803103 | 3.135419 | 0.9140063 | 3.705910 | 0.0248199 | 0 | 1 |
| 1.758576 | 4 | 1.0325410 | 2.995124 | 0.8736663 | 3.539782 | 0.0377211 | 0 | 1 |
| 1.680351 | 5 | 0.9867038 | 2.861629 | 0.8349063 | 3.381912 | 0.0560404 | 0 | 1 |
| 1.605606 | 6 | 0.9427292 | 2.734583 | 0.7976745 | 3.231859 | 0.0813486 | 0 | 1 |
| 1.534186 | 7 | 0.9005498 | 2.613655 | 0.7619201 | 3.089205 | 0.1153435 | 0 | 1 |
| 1.465943 | 8 | 0.8601009 | 2.498531 | 0.7275940 | 2.953554 | 0.1597174 | 0 | 1 |
| 1.400735 | 9 | 0.8213193 | 2.388912 | 0.6946484 | 2.824536 | 0.2159802 | 0 | 1 |
| 1.338428 | 10 | 0.7841442 | 2.284516 | 0.6630366 | 2.701796 | 0.2852532 | 0 | 1 |
| 1.278892 | 11 | 0.7485167 | 2.185076 | 0.6327135 | 2.585003 | 0.3680621 | 0 | 1 |
| OR | Time | lower | upper | lower99 | upper99 |
|---|---|---|---|---|---|
| 1.66289 | 5.5 | 0.9754063 | 2.834929 | 0.8250698 | 3.351485 |
First half Mean
| OR | Time | lower | upper | lower99 | upper99 |
|---|---|---|---|---|---|
| 1.888483 | 2.5 | 1.107919 | 3.218979 | 0.9372084 | 3.805312 |
Second half Mean
| OR | Time | lower | upper | lower99 | upper99 |
|---|---|---|---|---|---|
| 1.437299 | 8.5 | 0.8428933 | 2.450879 | 0.7129312 | 2.897659 |
Odds Ratio Comparing: 1 vs 0 with no drug
[1] “Overall significance (p-value) of association across all time-points = 5.6271763278236e-19”
[1] “Akaike Information Criterion (AIC) = 19105.1964597493”
| Estimate | Std. Error | z value | Pr(>|z|) | |
|---|---|---|---|---|
| (Intercept) | -2.4407361 | 0.3160926 | -7.721585 | 0.0000000 |
| Class0 | -0.7464977 | 0.2728465 | -2.735962 | 0.0062198 |
| Timepoint | 0.0490534 | 0.0035623 | 13.769981 | 0.0000000 |
| Class0:Timepoint | 0.0455014 | 0.0050324 | 9.041740 | 0.0000000 |
| OR | Time | lower | upper | lower99 | upper99 | pvalue | Reference | Compare |
|---|---|---|---|---|---|---|---|---|
| 0.4740238 | 0 | 0.2776825 | 0.8091924 | 0.2347868 | 0.9570324 | 0.0062198 | 1 | 0 |
| 0.4960908 | 1 | 0.2908481 | 0.8461669 | 0.2459820 | 1.0005044 | 0.0100778 | 1 | 0 |
| 0.5191850 | 2 | 0.3045828 | 0.8849913 | 0.2576497 | 1.0461999 | 0.0159956 | 1 | 0 |
| 0.5433543 | 3 | 0.3189080 | 0.9257653 | 0.2698063 | 1.0942439 | 0.0248503 | 1 | 0 |
| 0.5686488 | 4 | 0.3338461 | 0.9685945 | 0.2824689 | 1.1447683 | 0.0377617 | 1 | 0 |
| 0.5951208 | 5 | 0.3494201 | 1.0135902 | 0.2956548 | 1.1979129 | 0.0560928 | 1 | 0 |
| 0.6228251 | 6 | 0.3656538 | 1.0608699 | 0.3093820 | 1.2538256 | 0.0814141 | 1 | 0 |
| 0.6518191 | 7 | 0.3825719 | 1.1105577 | 0.3236689 | 1.3126629 | 0.1154223 | 1 | 0 |
| 0.6821629 | 8 | 0.4001997 | 1.1627848 | 0.3385344 | 1.3745904 | 0.1598089 | 1 | 0 |
| 0.7139192 | 9 | 0.4185637 | 1.2176894 | 0.3539981 | 1.4397834 | 0.2160822 | 1 | 0 |
| 0.7471539 | 10 | 0.4376911 | 1.2754176 | 0.3700801 | 1.5084273 | 0.2853623 | 1 | 0 |
| 0.7819357 | 11 | 0.4576099 | 1.3361236 | 0.3868009 | 1.5807185 | 0.3681735 | 1 | 0 |
| OR | Time | lower | upper | lower99 | upper99 |
|---|---|---|---|---|---|
| 0.6163533 | 5.5 | 0.3614648 | 1.050979 | 0.3057344 | 1.242556 |
First half Mean
| OR | Time | lower | upper | lower99 | upper99 |
|---|---|---|---|---|---|
| 0.5327373 | 2.5 | 0.3125479 | 0.9080501 | 0.2643914 | 1.073444 |
Second half Mean
| OR | Time | lower | upper | lower99 | upper99 |
|---|---|---|---|---|---|
| 0.6999693 | 8.5 | 0.4103817 | 1.193907 | 0.3470774 | 1.411668 |
[1] TRUE TRUE
Odds Ratio Combined
Reference condition: 0
Odds Ratio Combined
Reference condition: 1
] NULL
[[2]] NULL